Pipelines & AI Tools

Shivom hosts a complete library of tools and pipelines for bioinformatics, take a look at our library below.
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Covid19 Assembly
Free
nf-core/covid19
Covid-19
Shivom
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Covid-19 Alignment
Free
lofteq-snpff
Covid-19
Shivom
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Covid-19 Calling
Free
nf-core/sarek
Covid-19
Shivom
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Covid-19 Kraken
Free
nf-core/vipr
Covid-19
Shivom
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Meta-GWAS
Free
meta GWAS using METAL
GWAS
Shivom
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Genetic Correlation
Free
Genetic correlation using LDSC
GWAS
Shivom
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GWAS
Free
GWAS using h3agwas
GWAS
Shivom
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2SMR
Free
Two sample Mendelian Randomization
GWAS
Shivom
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PRS
Free
Pologenic Risk Score using PRSice2
GWAS
Shivom
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PheWAS
Free
PheWAS using Phewas R package
GWAS
Shivom
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Colocalization
Free
Colocalization using Coloc R package
GWAS
Shivom
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Transcriptome
Coming Soon
NGS FCT: Transcriptome
NGS
Shivom
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Methyl-Seq
Coming Soon
NGS FCT: Methyl-Seq
NGS
Shivom
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ChIPSeq
Coming Soon
NGS FCT: ChIPSeq
NGS
Shivom
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CRISPR
Coming Soon
NGS FCT: CRISPR
NGS
Shivom
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Metagenomics
Coming Soon
NGS FCT: Metagenomics
NGS
Shivom
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WGS/WES/Amplicon
Coming Soon
NGS FCT: WGS/WES/Amplicon
NGS
Shivom

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